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GT20202

CSHL Arabidopsis genetrap mutant lines

Original: GT20202

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20202

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28677818 [Map]; Strand: c
      • AT1G76420.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -3884; Region: intergenic
      • AT1G76430.1 - [+] show detail - phosphate transporter 1;9
        Distance: 1117; Region: intergenic
    Flanking Genome Sequence: GT20202 - 5-prime edge
    TTTATATAAC TCATTATGAA TTAGTAGTAC CTTTTTTTTT TCCTATATAA 
    CTTCATTATA GAAGAAACTG ATTTGAGATT CTTAAGATCT AGCTAATAGA
    AAGGTTTTTT TGTCTAATGT TATTTTCTAT ATAGAATTTA TATACCGTCT
    TTTAACAACC AACTTTATTC TTTAATCGCA TCTTTATGAG TTTTTTTATT
    ATTATACGAA TTTTATAGCG ACGAAAAAAG TTACTAACAG TAGGAAAATT
    TCACATAAAA TTCTAGATAT TTAGGAAAAT AAAGTATTGT TAAGAACTTT
    GGGGAAAATC TGAAAACACA ACCATGATCA TCAATTAGAT ATTTCACCTT
    TTGGATCTTT GTGACATGAA TATGCATAGT CGTGCCAATT ACTAATTAGA
    GATACAATAC AAACTATACA AGCATAAGTT TGAAAAAGCT TTATCCAGAA
    ACTCAATAAT ACTATATGAT ATATGTGCAC GGTTTTATTG GTCCCCCGGC
    CCCAAATATG CAACTTTTCG CCCATATTTA TGAAGGCTTC GTCTGTCCCA
    GTATCCTCAA AACCTTTCAC ATTTATTGCC ATCCACTGTA CGGACGTCTT
    ATAAATGTAA TAACACTAAT CTCCATAACC TCATACTCGC ATCATATTAT
    CACTATAAGC TGGACCAAAC TTATT

AT1G76420.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary
Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.
Computational Description
CUP SHAPED COTYLEDON3 (CUC3); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3010 Blast hits to 3003 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3005; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76430.1

Model type
Protein coding
Short Description
phosphate transporter 1;9
Curator Summary
Encodes Pht1;9, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).
Computational Description
phosphate transporter 1;9 (PHT1;9); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 1;8 (TAIR:AT1G20860.1); Has 32041 Blast hits to 31917 proteins in 2260 species: Archae - 700; Bacteria - 22282; Metazoa - 2246; Fungi - 4097; Plants - 1720; Viruses - 0; Other Eukaryotes - 996 (source: NCBI BLink).
Link
InterPro Scan - TAIR