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GT20203

CSHL Arabidopsis genetrap mutant lines

Original: GT20203

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20203

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19540843 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20203 - 5-prime edge 
    GACAATTTCT TCACGGGAAG GAACCATTTC GTGATGCACC ATTTCAATAA 
    CCCTAATTTC GAGATGATCC GTCACGATGT AGTGGAGCCG ATCCTTCTAG 
    AGGTTGATCA AATCTACCAT TTGGCATGCC CTGCTTCTCC TGTTCACTAC 
    AAATTTAATC CCGTCAAGAC TATCATATCC TTTTTCTTTT CCTTCTATAG 
    GAATTTCAGT TTATCATCAT CAATGTTGTT ATATGTAGTA TGGATCTTGC 
    TTGCTCTTGT CCTTAACTCT GTGTGTGTGT ATACAAGACG AATGTGGTGG 
    GAACATTGAA CATGTTGGGA CTAGCGAAAA GAGTGGGAGC AAGATTCTTG 
    CTGACGATTA TGAGTGAGGT CTATGGAGAT CCTCTTCAAC GGTCCTCAGG 
    TTGAGACTTA CTGGGGCAAC GTTAATCCCA TCGGTACTAC CCCTTGATCT 
    CCCTCTCTGT TTCTTCTTCT TCTTCCTCAT TTTGAAACAA CAATTAAGCG 
    CACGTTAGCA AAAAAAACAC AGAGAGAGAG AGTTCTTTT

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR