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GT20228

CSHL Arabidopsis genetrap mutant lines

Original: GT20228

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20228

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3526411 [Map]; Strand: c
      • AT5G11090.1 - [+] show detail - serine-rich protein-related
        Distance: 565; Region: intergenic
      • AT5G11100.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -5991; Region: intergenic
    Flanking Genome Sequence: GT20228 - 5-prime edge 
    CCTGCCTTCA TGAATCCAAA AGATTCCCAA TTCCATTAAT AATATATTCA 
    TATGTCTTCT TTTCCCTCTG CTCCCTAATA TATTCCATAT GTTCAGTCAT 
    TTTCTAATTG GGTCAGTCAG CTATCTCTTT TACCAAAACA CTTTTTTTCC 
    ATTTCCCTCC TATGTAAATT TTGTCTTCAG TCATGTTTTT CCCTCCATAG 
    ATTTTTCGTT GATTTTTTTT TTATTTGCCC AAAAAGGAAA AACCTTTTCC 
    CCCTTTTTTG TTTTGGTTTT T

AT5G11090.1

Model type
Protein coding
Short Description
serine-rich protein-related
Computational Description
serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11100.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR