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GT20246

CSHL Arabidopsis genetrap mutant lines

Original: GT20246

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20246

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1957650 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT20246 - 5-prime edge 
    TTCTCGGTAA ATCTGGTCAC CCAATCGTGC ACAGAAGCTG TTCGACGAAA 
    TGCTTGAAGA AGGACTTGAA CCAACTGTTG AACTCTACAC TGCTCTTCTC 
    GCTGCTTACA CTCGCAGCAA TCTCATCGAC GATGCTTTTT CAATTCTTGA 
    TAAAATGAAA AGCTTTCCTC AATGCCAACC TGATGTTTTC ACGTACAGCA 
    CTCTGCTCAA GGCTTGTGTG GATGCTTCTC AGTTTGACTT GGTGGATTCG 
    TTATACAAGG AAATGGACGA GCGTTTGATA ACTCCAAACA CTGTGACCCA 
    GAACATAGTT TTAAGTGGGT ACGGTAGGGT CGGAAGGTTT GATCAGATGG 
    AGAAAGTTTT GTCTGATATG TTGGTGAGTA CTGCTTGCAA ACCCGATGTG 
    TGGACTATGA ATATCATCCT TAGTGTGTTT GGAAACATCA AACATGGGTA 
    AGATAGACAT GATGGAGAGC TGGTACGAAA AGTTCAGGAA CTTTGGGATT 
    GAGCCAGAGA CTCGGACTTT CAATATTTTG ATTGGTTCTT ATGGGAAGAA 
    GAGAATGTAT GATAAGATGT CGTCTGTCAT GGAATACATG CCAAAGCTAG 
    AGTTTCC

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR