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GT20250

CSHL Arabidopsis genetrap mutant lines

Original: GT20250

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20250

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20412383 [Map]; Strand: c
      • AT1G54660.1 - [+] show detail - pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity ...
        Distance: -934; Region: promoter
      • AT1G54680.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -752; Region: promoter
      • AT1G54680.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -752; Region: promoter
      • AT1G54680.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -752; Region: promoter
    Flanking Genome Sequence: GT20250 - 5-prime edge 
    ACAAATAGCA CATGCAGGCA TGCAGCAACA CAGACAGGCG TTCATCCCTC 
    ACTTACCTGC ATACATCATG GCAACTTGTT CCCATCTCAC CAGTCACCTC 
    ACTGTAGCGA GTAACAATTC GGTCCATGTG CTGGCTTGGC ATGGAAGGCA 
    ACCCTTTCTT TTTAATTGTT ATGTTAATAT ATGTAAGAAA CTATAATGAC 
    ACTTACAATG ATTGATATGA GGTAGGGGAT ATCATATTAG TGGCGCATAT 
    CATATTAGTG GCGCAATTAA AGAAGCTTTA ATGTGTCGCC GCCATTTAAG 
    CCTAATTCAA CGGGCTGATG GACATAAAAT ATTAAAATGA TTTTTTTTTT 
    TGTTTTGTTT TCGTCAAAAT ATTAAAATGA ATTGATTTGG CTCTTTAAAA 
    AACCAAAAAA AATCTGTCAC TTGTCAATTA TTCCCTCAAT TTTATTTGAT 
    TTATAGTTAA AAAATTTTTC AAACAAATTA AAAAAAAAAA AAAAAAAACT 
    TTTTTAAAAA TTTTTTTTTT TTAAAAAATA TAATCAAAAA AAATAATTTC 
    AAAAA

AT1G54660.1

Model type
Pseudogene
Computational Description
pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase {Solanum tuberosum}
Link
InterPro Scan - TAIR

AT1G54680.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in 57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54680.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54680.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1).
Link
InterPro Scan - TAIR