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GT20264

CSHL Arabidopsis genetrap mutant lines

Original: GT20264

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20264

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22771746 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -472; Region: promoter
      • AT3G61530.1 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: exon5 (CDS)
      • AT3G61530.2 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT20264 - 5-prime edge 
    ATCTCCTCAA GCGACCTGCG ACGGATTCTT AACCCTATTT ACAGAAATTG 
    GGATTAGATA AAGCTGCTTC TGATGCATCA GCATCAGCTG AAAAGATGGA 
    TCATTCAGAT TCACCATCTT CTCAGTGACA AAGCTGTTGC AATTCTCGTA 
    GCTCTTCATT TTGAGTAGGT TGAAGAAATA AAAATCCTTT AATAGGATAG 
    TTATTAGCGG GTAAAACTAG TGTAATCCAT AGGAGCTATT TCAGAGTTCA 
    GGGTGGTGGC TTGATTAATA AAACAAGGGG ATAATTATAT GAGAAAAATA 
    AAGATTCGTC CTCATTTTGT TATAAATATA ATGTAATCAG TCAGCATAAT 
    AAAAAGCTCA CGTTCAGTTT TATGAGAAAA AATAAATTTT TGTACCCATT 
    GTGTAATATT GTAAAGGTTT

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61530.1

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 7570 Blast hits to 7570 proteins in 2036 species: Archae - 128; Bacteria - 4151; Metazoa - 4; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 3088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61530.2

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR