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GT20279

CSHL Arabidopsis genetrap mutant lines

Original: GT20279

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20279

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23056208 [Map]; Strand: c
      • AT3G62300.2 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
        Distance: 0; Region: intron5 (CDS)
      • AT3G62300.1 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT20279 - 5-prime edge 
    ATCGGCATGT TCAATAGTGG CAGCCTTTGA ATTATTACCA GACACACCTA 
    CATGTTATTA TGCCAAGAAT GTTTCAAGAT TGCAAAGAAA CAAATGCTGG 
    TTTACTTATC CACTAAAGTT AAGACACCAT ACCAATCTTC TGCTTAGGCT 
    CTGCGACTAT GAACTTGCGT GGCTGTCCTC TTTTCCTCTT GTTAACACTC 
    ACCTTCTCTC CAACAGAATC ATTTGTAGAG CTCTTTTGAT TCTTCATCGC 
    TTGAAGTTTC TTCTTCGGAG TTGTTTTTCC TTGTGTTTTG ACTGCTGCAG 
    CTACGCCCAG GACTACCGAT GGGTGAAACT CTTTTGCTAG AATCAGTAAA 
    TATGTAGATT CATTTCTCTC GACAAACAAC TACCAATAAC AATAACCATC 
    ATACTTGTGA AGGTAAAGAA TGATATAACA CTTACGTGCT GCTATCTCCG 
    GTTGGCTTGT GACTGGAGCG CTCTCATTCA TCACAACATC AGCCAAACTA 
    TTCCCTAGTT CTCCAGATAA CTGCTGCAGG AAACACACAA AGTTAAGCCT 
    AATTACCCAA TAATTTATGT CATTGGA

AT3G62300.1

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 7
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62300.2

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 7
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1).
Link
InterPro Scan - TAIR