1. Home
  2. Mutant Lines
  3. GT20335

GT20335

CSHL Arabidopsis genetrap mutant lines

Original: GT20335

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20335

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11046102 [Map]; Strand: c
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20335 - 5-prime edge 
    AGCACATTAT CCATCTTACC CAAACTTCGC GGGAACCCCG CAGAAATAAC 
    TGTATCCTCC AGATAATCCC ATCGGATCCT ATCATAAGCC TTCTCCAAAT 
    CCAACTTCAA AAGCATCCAG CCCTTTACCC CTTTTTTTCT TCTCACTCGA 
    CGAACTGCTT CTTGAACGAA CACTATATTA TCCGTACTTA CTCTCCCGGG 
    GATAAAACTA GATTGAGCCG GACCAATCAG ATTTGTCATT AAAGGTTTCA 
    GACGCTCTAC CATCGGCTTA GTGATGATCT TGAAAAGCAC ATTGCATAGG 
    CTGAGGCGCT TCTTTTTAAC AAGCCCCAGC TCACTTC

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR