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GT20339

CSHL Arabidopsis genetrap mutant lines

Original: GT20339

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20339

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2350034 [Map]; Strand: c
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 1243; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -4685; Region: intergenic
    Flanking Genome Sequence: GT20339 - 5-prime edge 
    AAAACAAAAA TAAATAACTG TTGACACCAC TAGATAATTC CTACCCAAAA 
    CACGTTTGAT TTGCTGTTGA CACACTACTC GCCCTATCCG GGAATAATTT 
    AACTAGATTG ATATGCTCTG AGATCGTACC ACCAGTCACT AACTCTGATT 
    TTTCCTCTTT TATTCGACAT GTTGCGTGTT CGCCCTAAAG AGAACAAATA 
    GATAAACAGA AGAAATAATC GATCTGAAAT CAGCGATTAA AGATCATAAA 
    TACGACCTTA GTTTTCTATA CGTACATGTG CACGCACTAC GATCTCTACA 
    CTACACCAAA CATTTACATA GTTATACAAT CAGCATTGTA CAGTACAAGA 
    AGTAAATCTG AAAAACGATC GAATTTCATT AGATAAAGAA TAATTTATAT 
    ATTTCCATCG TTTGTATCAT CGAAAA

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR