1. Home
  2. Mutant Lines
  3. GT20341

GT20341

CSHL Arabidopsis genetrap mutant lines

Original: GT20341

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20341

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1160304 [Map]; Strand: c
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: -330; Region: promoter
      • AT5G04230.1 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: -527; Region: promoter
    Flanking Genome Sequence: GT20341 - 5-prime edge 
    GATGGCACGC ACTGTATCTC TCATCAGAAG TAGAAGTCTA AAATCGTTGC 
    TGACGTTGCC GCGCAACAAA GCACAATTGT CTTTGCTAGG CACTCCACAC 
    TTTGTTAACT GGTAAAGGTT AACGGAAAGC CTTAAAATCT AATCAAACGA 
    GGAATCATAA AAGGCTAATC TTTGCAAGAC ACTCAACAAG TTGTTGTTAT 
    CGACAGCAAA AAAGAAACGA TAATGTTGAG AAAAAAGTTG AAATAAATAA 
    AGAAGGATGT TGAAATTTGA AAGTAGTACA CTAAAGATTT TGAACAAAAC 
    AAAAGTAATA ATAATTGAAT GACCAGAAAA GTATAATTGC ATAATTCATA 
    ATTCAGGATA TATATTGTTG TTGGGAGACA AGTAGCCTAG TGGCGGCTCT 
    TTCTCTCTTA CACCACTCAA CATGCGGTGG ATTAA

AT5G04230.1

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04230.2

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link
InterPro Scan - TAIR