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GT20365

CSHL Arabidopsis genetrap mutant lines

Original: GT20365

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20365

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2928223 [Map]; Strand: c
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: 8; Region: intergenic
      • AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 588; Region: intergenic
    Flanking Genome Sequence: GT20365 - 5-prime edge 
    TTAATTAAGT TGTTACAAAA AAATATCAAA ATACTGTAAC AGGGAAAATA 
    AATTTTGAAA ACATTATTTT TTTCCCTTTC AAAATCTTCT GCATGACAAA 
    GATCGAGTCT TTCGTACAGG AGTTGGAGTA GGTGTTGTAA CACAAAAATC 
    TGGCGTACAG ACATATCCTT TCTCCGAAAT ACCCTTTCCG CTAAACAGCT 
    CCGACAAGTG GTTTCCAATA TCTTCAGGGT TATATCGGAC CTTCCACTGG 
    CCTTCCGTTC CCGCTAACAT AACGGCATTT CTATGAGCGT TGTAAAAATC 
    GCGGTAAACC GGTAACAGTT TTCTCCCGAT CGAAATTCTC ATCTCGTCCA 
    ACAGCTTCGG ATCTAGTACG ATGCACTCAC TCTGTGCCTC GCACGTGCTC 
    TCGAAAGTCT CGTTGAACTT TTTGAATTGC ATCATCGCTT CTTCGGGCGA 
    CATCTCCACC GCCTCCGAAG TACTAATCGC CGGACACATC GACGCCAATG 
    GACCCCATGC CAACCGCTCG TAGCTTCTTG CGAACTGTCT AACTTTCTCT 
    GAGTTTTTCG CTATCCAATC GTTGCCGAGA ACATGCTTCA CGTTCGTGGA 
    TCGAGCACGT GAGACAACGT GTTGGAGATT GTTGGCTAAG AAGAGATACT 
    GCATTGAGAA GTCCTTGTAC ATTTCAGCTT TGCCGTCGAT TTTACAGAGG 
    AGGACGAGAA TCATCCACGC GAATCGTGCT TTTA

AT3G09530.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H3
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09540.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR