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GT20379

CSHL Arabidopsis genetrap mutant lines

Original: GT20379

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20379

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10424891 [Map]; Strand: c
      • AT5G28469.1 - [+] show detail
        Distance: -8798; Region: intergenic
      • AT5G28470.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4910; Region: intergenic
    Flanking Genome Sequence: GT20379 - 5-prime edge 
    ACTTAGACAG CTCCTTTCCA CCTGTTTCTT CTCTCTCGAC GAAGAATCAT 
    CCTTCAACAA TATGTCGTTG GCTTTTTTTC TGTGTCTTGA TATTCTTTGT 
    ACTTTGGAAA GTCATTTTTA CAATGACATT TTTAGAAAGT AAAGTCATTT 
    TTACAATGAC ATTTTTAGAA AATGGGATTG TC

AT5G28469.1

Model type
Pseudogene
Curator Summary
pseudogene of disease-resistance protein
Link
InterPro Scan - TAIR

AT5G28470.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 3642 Blast hits to 3525 proteins in 525 species: Archae - 0; Bacteria - 558; Metazoa - 480; Fungi - 335; Plants - 2158; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link
InterPro Scan - TAIR