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GT20387

CSHL Arabidopsis genetrap mutant lines

Original: GT20387

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20387

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 529504 [Map]; Strand: c
      • AT2G02100.1 - [+] show detail - low-molecular-weight cysteine-rich 69
        Distance: 396; Region: intergenic
      • AT2G02103.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 737; Region: intergenic
    Flanking Genome Sequence: GT20387 - 5-prime edge 
    GCAAAAAAAA TAAAATTAAA ACATTACTGG TTGTATAAAC TTAATATATG 
    GTATTTTATA TACTCACTGA TGCAAAAAAA AAAACAAAAT TTTTATTTGG 
    AATTTATATA AAAAAAAAAA AAAAAAAAAA ACCCCCGTAT TTTTTCCCCC 
    CTTTATTCTT CCCCCCCAAC AAAAATTTAT AACCCCCCCA TTTACATCCA 
    AAAAAAAATT TTGGGAAGGT TAACCCAAAA TTTAAAGAAA AACCGGCCCC 
    TTTGAAAAGG TTTTATCTCC GGCCAAAT

AT2G02100.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 69
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02103.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR