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GT20424

CSHL Arabidopsis genetrap mutant lines

Original: GT20424

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20424

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1749041 [Map]; Strand: w
      • AT1G05810.1 - [+] show detail - RAB GTPase homolog A5E
        Distance: 0; Region: exon2 (CDS)
      • AT1G05820.1 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 5
        Distance: -641; Region: promoter
      • AT1G05820.2 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 5
        Distance: -641; Region: promoter
    Flanking Genome Sequence: GT20424 - 5-prime edge 
    CTTTACATTG GTCTGAGATC TAAAATTGAT TCATTTGCTC TTTTCTTGGT 
    TGTTTCAGTC CATTCGGATA CGACGGTGGC GAGAATGCTG GTGGGGAACA 
    AGAGTGATCT AGAAAACATA AGAGCAGTGA GCGTGGAGGA AGGAAAGGCT 
    CTAGCCGAAA AGGAAGGACT CTTCTTTGTG GAAACATCGG CTCTTGATTC 
    GACTAATGTT AAAACAGCTT TCGAGATGGT GATACTTGAT ATCTACAATA 
    ACGTGAGCC

AT1G05810.1

Model type
Protein coding
Short Description
RAB GTPase homolog A5E
Computational Description
RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05820.1

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 5
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05820.2

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 5
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR