1. Home
  2. Mutant Lines
  3. GT20460

GT20460

CSHL Arabidopsis genetrap mutant lines

Original: GT20460

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20460

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041432 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon10 (3UTR)
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT20460 - 5-prime edge 
    ACTTTCTCCC TGGTCTCAGC AGCCGGCGTA GAGATGATTG CTCTTTGTTT 
    CTTTTGGTAA AGCCGTCTTT TTTTTGCTCT GCTTCTGTTT GTTTAGTGTG 
    TATCCCGGAA CCAGTGTAAT TTATGGAATG CTTTTGTGAT TTCATTGCTT 
    ATGCCATGAG TGTGTTTTCA ATCTGATTGT TTCCGACTAC CAATTGTTTG 
    CTCTTACTTC ATCTCCCTCG ACAATTACAT TTAGAATGTG AATTAATATG 
    TTTCTGTTGC TACTGTGTGC TTGTGGTCTC AGTGATCCAA CTTTTGTTTC 
    TGCTAATTCT ACGGTTCTTG CTCCTCTTGT TATGGTTCAT TTGCCAATGG 
    AATGGACCAA AAAGGTGTTG

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR