1. Home
  2. Mutant Lines
  3. GT20484

GT20484

CSHL Arabidopsis genetrap mutant lines

Original: GT20484

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20484

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18749841 [Map]; Strand: w
      • AT5G46240.1 - [+] show detail - potassium channel in Arabidopsis thaliana 1
        Distance: -3111; Region: intergenic
      • AT5G46250.1 - [+] show detail - RNA-binding protein
        Distance: -5470; Region: intergenic
    Flanking Genome Sequence: GT20484 - 5-prime edge 
    CTTTCTCCCT GGTTATGGAT GGAATATCGT CCCGGGTTGA TCCTCTTTCT 
    CATGTTACTA AGAGAAGAAA AATCTGATTT AACACAGATA AAAACAAGAT 
    AATTTTCCAC AATTTCAACG GTGCAAGAAC AACATGATAA ACGAGTCATA 
    GACACTGCAT AAGTGATTTT GTTTGTGTAA TGTCGGCATG ATTTATGAGA 
    TTTGTTTTTG TCGTCTACAC TAAAAGTTAG GCTTCATATT TCTTATTGGG 
    TAAAACTTGC AGGCTTCTTA CTGTTTTCGC AATGTACCAT TTGATATCTA 
    AATTACCTAA GAGTTGTACA AAATCAAGAA ATAATATTTA GATAGCAAAA 
    AGAATATTAA GATTTTCCCA GTAAGGTTAG CAATTATCTC TTCAATCAAA 
    CATGGCATTT ATAGTTTGGC CTATAAACTT AGGTTTTGAA ACATGTGATG 
    AATTATAATG TTTGTAGGAT GTGTGTGTGT CTAACGCAAT TAGGTTCATG 
    TAGTTAATGA CGAGTA

AT5G46240.1

Model type
Protein coding
Short Description
potassium channel in Arabidopsis thaliana 1
Curator Summary
Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5
Computational Description
potassium channel in Arabidopsis thaliana 1 (KAT1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: potassium channel in Arabidopsis thaliana 2 (TAIR:AT4G18290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46250.1

Model type
Protein coding
Short Description
RNA-binding protein
Computational Description
RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link
InterPro Scan - TAIR