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GT20490

CSHL Arabidopsis genetrap mutant lines

Original: GT20490

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20490

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4595640 [Map]; Strand: c
      • AT3G13920.1 - [+] show detail - eukaryotic translation initiation factor 4A1
        Distance: -678; Region: promoter
      • AT3G13920.2 - [+] show detail - eukaryotic translation initiation factor 4A1
        Distance: -678; Region: promoter
      • AT3G13920.3 - [+] show detail - eukaryotic translation initiation factor 4A1
        Distance: -721; Region: promoter
      • AT3G13920.4 - [+] show detail - eukaryotic translation initiation factor 4A1
        Distance: -641; Region: promoter
      • AT3G13930.1 - [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
        Distance: -236; Region: promoter
    Flanking Genome Sequence: GT20490 - 5-prime edge 
    TGAACGGCAG GGATTAGTCA AACTTATTAA TGGGCCTAAT CTTTGGCCCA 
    TCGTTTTCCC TCGATTCCTG TCACACAAAA AACTCCTAGC TCTTCCTCTA 
    CCTACACAAG CTAAATACAT ATTTTTTGCT TATCCTAAGC ATCATGATTA 
    TGTTTTGCCC TCTCCAGCTT TTTCTTCAAT GGCAACAGAT TCTAAGAAAG 
    TCTCTTGAGG CTAAAATCAA AGCATTTTTT GTTGAAGATA GATAGCAACT 
    TGCTGCTTCT TCATACTAGC TAGTTACCTT CTTCTTACTC AATGTGTTTT 
    GCTTCGTTTC AAGGATTCTT CATATCAC

AT3G13920.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 4A1
Curator Summary
eukaryotic translation initiation factor 4A-1
Computational Description
eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13920.2

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 4A1
Curator Summary
eukaryotic translation initiation factor 4A-1
Computational Description
eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13920.3

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 4A1
Curator Summary
eukaryotic translation initiation factor 4A-1
Computational Description
eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49587 Blast hits to 48995 proteins in 3133 species: Archae - 779; Bacteria - 27305; Metazoa - 6121; Fungi - 4627; Plants - 2620; Viruses - 17; Other Eukaryotes - 8118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13920.4

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 4A1
Curator Summary
eukaryotic translation initiation factor 4A-1
Computational Description
eukaryotic translation initiation factor 4A1 (EIF4A1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.2).
Link
InterPro Scan - TAIR

AT3G13930.1

Model type
Protein coding
Short Description
Dihydrolipoamide acetyltransferase, long form protein
Computational Description
Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
Link
InterPro Scan - TAIR