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GT20509

CSHL Arabidopsis genetrap mutant lines

Original: GT20509

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20509

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10831603 [Map]; Strand: w
      • AT4G19985.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G19990.2 - [+] show detail - FAR1-related sequence 1
        Distance: -700; Region: promoter
    Flanking Genome Sequence: GT20509 - 5-prime edge 
    GTTACAAAGT GAATACAAAT TCCTCAATTC CTCTAGATTT ATGTCTTTCT 
    TCAACGTAGA TATATATATA GGTATCGATC GAGGCAATGC CGATGCAGCA 
    TTATCAGATT TTCTCCTCCT TGCCCACCTC AACTCCATAG ATACAAGAGA 
    AGACTTACCA ACACAACCCA CCAAACCCAT TTCCTTAAGC AATCTTGGTC 
    ACACAATAAT GCACCATCTA ATCAGGAAAC ATGACATGAT AATCAAAACT 
    CACAGTACCA ATTACCAAAC CTTACAGAAA TCTATCAAAG AGTTATTTCT 
    TGAAGAGAAA CTATAGACTA AACAAAATAC ACATTCTACT CAAAGATTCA 
    ATTTTTACGT TTACAATGAA CAAAAGATTG CAAATTTCTC AGAAATCGAG 
    CTCAATCAAC ATTCCAAGAC TCAAAATTTC ATGAGAATAC TAACTACCAT 
    AAGCGTAAAT CTCTATGAAT TATCTGATTA ATGATAAAAA TATGAAACCT 
    GGGGAAAGTT CTGTCAAATT TCTCGAAGAA AATCAACCAT TTTTGCTTCT 
    AAACTCACGA TTTTTCCATC AGCAGAGGTG

AT4G19985.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Computational Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19990.2

Model type
Protein coding
Short Description
FAR1-related sequence 1
Computational Description
FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1).
Link
InterPro Scan - TAIR