1. Home
  2. Mutant Lines
  3. GT20526

GT20526

CSHL Arabidopsis genetrap mutant lines

Original: GT20526

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20526

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 71391 [Map]; Strand: w
      • AT1G01150.1 - [+] show detail - Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
        Distance: 0; Region: exon2 (CDS)
      • AT1G01160.1 - [+] show detail - GRF1-interacting factor 2
        Distance: -948; Region: promoter
      • AT1G01160.2 - [+] show detail - GRF1-interacting factor 2
        Distance: -966; Region: promoter
    Flanking Genome Sequence: GT20526 - 5-prime edge 
    GAAAAGTGTC TTCGCAGCTG CAACACCCTT TGTTCTCAAA GCCGTGGATC 
    TAGTAGCTTG CTCCTTAAAC CAACAATAGG GACAGTAAAA GGTTGCAGGA 
    TCTTCACAAT CAAGCTCAAC ACACTTCCTG TGAACAGCGA GAGGGCATTC 
    ATTCCCAGAA CAAGGTACTA CACCATCGTC TGCAATATCG CATACAATAC 
    ATGCGTGTTC GTTCAACGGC TCAAAGCTTC TGAAAGTGTC ACTTGTCCCA 
    AG

AT1G01150.1

Model type
Protein coding
Short Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Computational Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01160.1

Model type
Protein coding
Short Description
GRF1-interacting factor 2
Curator Summary
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
Computational Description
GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01160.2

Model type
Protein coding
Short Description
GRF1-interacting factor 2
Curator Summary
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
Computational Description
GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR