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GT20536

CSHL Arabidopsis genetrap mutant lines

Original: GT20536

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20536

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8657325 [Map]; Strand: c
      • AT3G23955.2 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G23955.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G23960.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -411; Region: promoter
    Flanking Genome Sequence: GT20536 - 5-prime edge 
    TCCTACTTTC TCCCTGACCA GAGAGCCGTC CAAAAGAAGA ACAAGCTAGC 
    TTCGTTCGTT AATACATGCA CCATTTGCCA TTTGGTAGTA AAACCTTTCT 
    TCTCACTCGA CAAAGCATTT TATTATGTAT TGGGCCCATA GGCTTCTTAA 
    CAAAATATCA AATTTTACCC AGATTTAGTG GGCTTTGTTG GGCTTTTGTG 
    TATCAGAAGC TCATTTATAA ACAAACATAC ACTGATACAC ACGCGAGAAA 
    CTACAAGGTT CCAGCAAGGT TCCAGTTACC AGATCCTTTG TTAACTCAGA 
    TTCTTAATCA TCTTCCCACA GAGGAAGCTG TGAAGACAAG CGTTTTATCC 
    ACCAGATGGA GAACTCTCTG GCTTTGGGTT CATAATTTGG AATTGTCATT 
    TTCGAAGTTC TCAAGTTTCA ATGCCTTTTT GAGTTTTGGT AACTGGTTTT 
    TCGATTCCGA TAGAGTTTCA TGCATAGAGA GCCTCAAGTT ATCTTTAGAT 
    GGAAATGATG CATCCTATCT CAGACCATGG ATTGATGCCT

AT3G23955.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53635.1); Has 1142 Blast hits to 1107 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23955.2

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53635.1).
Link
InterPro Scan - TAIR

AT3G23960.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1347 Blast hits to 1277 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1347; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR