1. Home
  2. Mutant Lines
  3. GT20570

GT20570

CSHL Arabidopsis genetrap mutant lines

Original: GT20570

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20570

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1561598 [Map]; Strand: c
      • AT4G03510.2 - [+] show detail - RING membrane-anchor 1
        Distance: -2222; Region: intergenic
      • AT4G03520.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 761; Region: intergenic
    Flanking Genome Sequence: GT20570 - 5-prime edge 
    CCTACTTTCT CCCTGGGTTT TATAATAATA CATCAGTTGG ACTTTTATAA 
    ATGCATTTTC GTGACTTTTG TTTGTATCAA CAACTTTCAT TATAATATTA 
    TGATTTGGAC TTTGTAAATG GTCTTCTCGT GTCCTTTTGT TTGTATCAAC 
    TTTCGCGACC TAAGAAGTCA CGACGACATT CAAAAATGGA ACATGAGCAT 
    AATGATCAAA ATTAGAACAA GTGTGAAATA TCGAAACAAA GGCAAGTCAA 
    TATCGGACAG CTTCGTACGT GAAACCTAAC CCCCACTTGA GGTTCTTAAT 
    GTTTTAAAAT AAACAAGCGG ACAATGTTTT AATCATTTGA CCTTCATCTC 
    TCTCGA

AT4G03510.2

Model type
Protein coding
Short Description
RING membrane-anchor 1
Curator Summary
RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.
Computational Description
RING membrane-anchor 1 (RMA1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 2 (TAIR:AT4G28270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03520.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
chloroplast localized thioredoxin, similar to prokaryotic types.
Computational Description
ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 20603 Blast hits to 19509 proteins in 2977 species: Archae - 276; Bacteria - 10688; Metazoa - 2669; Fungi - 1127; Plants - 1883; Viruses - 7; Other Eukaryotes - 3953 (source: NCBI BLink).
Link
InterPro Scan - TAIR