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GT20576

CSHL Arabidopsis genetrap mutant lines

Original: GT20576

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20576

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18080397 [Map]; Strand: w
      • AT4G38710.1 - [+] show detail - glycine-rich protein
        Distance: -314; Region: promoter
      • AT4G38710.2 - [+] show detail - glycine-rich protein
        Distance: -314; Region: promoter
      • AT4G38730.1 - [+] show detail - Protein of unknown function (DUF803)
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT20576 - 5-prime edge 
    GGACAAATTT GTATACAAAA GACTGTTACA AAACTATCAA GTATATACAG 
    AAAGCTAGTT TACATTCTTC TCTCTCGTAC AAAGATTAAT TAGATGATCT 
    TCTGATTCGG ATCCCAACAT CCTTTCGTTC AGCACAAGGT TTAAATCTTT 
    GTTACCTTCC TAATATTCAG GACTGTACAA ACTTGTCAAA TGTTCTTCGT 
    CAAAGCTCTT CCCTGAATCC TGCCATCTCA TTCGTCGTGG CGAAGCTTGT 
    TCCTCTTCCC CCACGAAATG GAGTATAACC GTTCCTGTAA GCACTGTGAT 
    GAATCCACAA ATCTCAGAGG CTATGCTGTC TGTGTTTTGC CCATTCCAGT 
    CCTGTTAAGA AAAAGGTGAT TCATTTGACA ATCTTGAAAC ACGAGGATCA 
    TTACTCTTAG TGTTTGTTGA AATCTCTCTA CCTTGAACAT GATTGCACTA

AT4G38710.1

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 13357 Blast hits to 7743 proteins in 694 species: Archae - 46; Bacteria - 1331; Metazoa - 4294; Fungi - 1200; Plants - 649; Viruses - 189; Other Eukaryotes - 5648 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38710.2

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1).
Link
InterPro Scan - TAIR

AT4G38730.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF803)
Computational Description
Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT2G21120.1); Has 1281 Blast hits to 1255 proteins in 234 species: Archae - 0; Bacteria - 123; Metazoa - 451; Fungi - 355; Plants - 247; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR