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GT20587

CSHL Arabidopsis genetrap mutant lines

Original: GT20587

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20587

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16945111 [Map]; Strand: c
      • AT4G35760.1 - [+] show detail - NAD(P)H dehydrogenase (quinone)s
        Distance: -434; Region: promoter
      • AT4G35770.1 - [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G35770.2 - [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G35770.3 - [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20587 - 5-prime edge
    TTTCTCCCTG GGTATTGGCA CTTGAAAGAT CACATGTTTG TAGAGGTGGA 
    GAAATAGCCG ATGACCAGTT TCCAATTCGT GATGTTGTGT TAAAAGCAGT
    GGTTTCCATT TTCACTTCTT CTTTGAAACT TCTTTTAGAA TGCTTTGATG
    CT

AT4G35760.1

Model type
Protein coding
Short Description
NAD(P)H dehydrogenase (quinone)s
Curator Summary
Encodes a bimodular enzyme comprising an integral domain homologous to the catalytic subunit of mammalian vitamin K epoxide reductase (VKORC1, EC 1.1.4.1) that is fused to a soluble thioredoxin-like moiety. Using yeast microsomes as a recombinant system, it was shown that the VKORC1 domain of At4g35760 functions as a stringent naphthoquinone reductase, and that its reduced Trx-like partner can serve as its electron donor. Located in plastid.
Computational Description
NAD(P)H dehydrogenase (quinone)s; FUNCTIONS IN: NAD(P)H dehydrogenase (quinone) activity; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35770.1

Model type
Protein coding
Short Description
Rhodanese/Cell cycle control phosphatase superfamily protein
Curator Summary
Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational Description
SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 1680 Blast hits to 1680 proteins in 570 species: Archae - 16; Bacteria - 1250; Metazoa - 4; Fungi - 10; Plants - 192; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35770.2

Model type
Protein coding
Short Description
Rhodanese/Cell cycle control phosphatase superfamily protein
Curator Summary
Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational Description
SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 254 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35770.3

Model type
Protein coding
Short Description
Rhodanese/Cell cycle control phosphatase superfamily protein
Curator Summary
Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational Description
SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 257 Blast hits to 257 proteins in 81 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR