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GT20718

CSHL Arabidopsis genetrap mutant lines

Original: GT20718

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20718

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22210548 [Map]; Strand: c
      • AT3G60130.1 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron1 (CDS)
      • AT3G60130.3 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron1 (CDS)
      • AT3G60130.2 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT20718 - 5-prime edge 
    CCTACTTTCT CCTACTCCCA GATACTTGGT ACTCTACCAT CTTCATGTGC 
    AGCTCCTTCA CACTGCAAAA TCGAAAAATG TTAACATACA TACAAAAAAG 
    AACCAATGGA CAAAAGAATA AGAACTAAAC CTGATAAGCA GAAGTAGCAG 
    ATCCAAAAAC GAAATCTTGT GGGAAATCAT TTCTTCTCAC TCGACGACTT 
    GTGGAATGCT TCTTGGCGGA AACTCCGATG CAGGCCAAAG TAATGAGCAA 
    CAGTAAACTT AGAAATTTAC CTCTCATTGT TTTCTTTTCT GCTGGCGAAA 
    CTAATTAAAT TTTTATTTT

AT3G60130.1

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 11475 Blast hits to 11098 proteins in 1475 species: Archae - 144; Bacteria - 7936; Metazoa - 718; Fungi - 200; Plants - 1457; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60130.2

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60130.3

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 11180 Blast hits to 10839 proteins in 1465 species: Archae - 144; Bacteria - 7776; Metazoa - 711; Fungi - 196; Plants - 1395; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).
Link
InterPro Scan - TAIR