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GT20720

CSHL Arabidopsis genetrap mutant lines

Original: GT20720

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20720

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054674 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1900; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6301; Region: intergenic
    2. Chromosome: 4; Position: 3055172 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2398; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5803; Region: intergenic
    3. Chromosome: 4; Position: 3061117 [Map]; Strand: c
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    4. Chromosome: 5; Position: 11184767 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -253; Region: promoter
    5. Chromosome: 5; Position: 11185269 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -755; Region: promoter
    6. Chromosome: 5; Position: 11185771 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1257; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4772; Region: intergenic
    7. Chromosome: 5; Position: 11186273 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1759; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4270; Region: intergenic
    8. Chromosome: 5; Position: 11188284 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3770; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2259; Region: intergenic
    Flanking Genome Sequence: GT20720 - 5-prime edge 
    CTTTCTCTCT GTCGAGAGCA TTATTGCTGG TATGATCGCA TCCGTTAGTA 
    TATGCAATGC AATCGTATAT ATTCTTCTCT CTCGA

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR