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GT20842

CSHL Arabidopsis genetrap mutant lines

Original: GT20842

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20842

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 621181 [Map]; Strand: w
      • AT1G02813.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT1G02816.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -280; Region: promoter
    Flanking Genome Sequence: GT20842 - 5-prime edge 
    CTTTCTCTCT CTCGACAGGT GCTGCTTCGG AGGAGTTCTC GAGCAAGTAT 
    TTCGTGGACA GCCCAAAGTG TGGTTGTGGG TTTAATTGTT ATAGGCCTAT 
    CTCTTCCTCT TAAAGCCCAT GGGCCTTAAA GCTGTTATGA TTATAATATA 
    TAAAATAAAC ACGGCCTCGA AGCTGTTATG ATTTATGAAT ATATAAAAAT 
    AAACACTACT GTTGGTTTAA GCCCAAAATT AGCCCATGTG AAGAATTTTG 
    TTTGTTTTGA AACAAAATGA CAAAAAGACA CCTCATGGGC TTACTGATGA 
    CACGTGTCGA GTTGTTCGGT TAAAACGATG TCGTGTTTAT GGTCGCTTGA 
    TCTGATCAGA TGTGCCAGCT ATACAAAAGT CTCTCACGTC TCTCCCAGAA 
    AACTCTTATT TTATCGCCGA GAAAGTGACG GAAAACGAAA TCCAAACGGG 
    ATAATAAACC TAAAACCTAA ATTAGTGATT TAGCTACGAC TCCTAAAGAT 
    TCAAATTTGG GTTACATCGG ACGAATCATG ACTCTGCTTC CGATTTCAAT 
    CTTCTTCTTC TTTTTATTTT GCATTCCTTC GCCATTAATC GCCGCCGCTA 
    ACGAT

AT1G02813.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, cauline leaf, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 501 Blast hits to 500 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 500; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02816.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR