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GT20866

CSHL Arabidopsis genetrap mutant lines

Original: GT20866

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20866

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1444933 [Map]; Strand: c
      • AT1G05030.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -3516; Region: intergenic
      • AT1G05040.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protei...
        Distance: 2436; Region: intergenic
    Flanking Genome Sequence: GT20866 - 5-prime edge 
    ACTTTCTCCC TGATGCATCA TAAATAATCT CCGACGAAGA AATTCCTCCA 
    TCTCGTTGTA AATTTCCGGT CATGTTCTTC TCATTCCGGC AACAACTTCA 
    TCTCCGTCGA GTAGAATCTC TTATAATCCC AGATTCACCT TTAAACACCT 
    CCTTGCCATC GCTAATGATC GACCCGCCGA AGAGATACGA ACGAACGAAC 
    GAACTCACCG AATAATTCTC AAAGCGAGAA TGAGGAGAAT GAGATTCATA 
    ACGGCTCTTC GACATAACTT GCTCAAGAAG AAACTCAAGT TTTTTAAAAG 
    AAGAAGAAGA AATAGCACTT TAGGGTTTTG CTCTTCGGAG GTTGAGAACT 
    TTGATCCTTA AGAAGAGATT AGTATAGTAT TTATAAGGAA GGTTTTTTTT 
    GGTAGGAAAG GGGGGAAAAT CCCC

AT1G05030.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3); Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588; Bacteria - 15264; Metazoa - 5199; Fungi - 6752; Plants - 2455; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05040.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR