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GT20870

CSHL Arabidopsis genetrap mutant lines

Original: GT20870

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20870

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958165 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -736; Region: promoter
    Flanking Genome Sequence: GT20870 - 5-prime edge
    CGTCAATGTC TCTCTCGTTT TCTTCTTCGC TATGTTCATC CAGAATCCCC 
    GAAGGTAAGC GTAGGTTTCG TCACAGAGAT GTGGGCATCG TTAGATGCGT
    TTTGGCTGCT TCGAAATCTT CTCCGGGAAG TGTTACGAAG AAGAGGCTTT
    GGAAAGACGG CGAATTCCCC GGAATCACGG AGCCGGTTAA TCAGAGAAGA
    ACTCCGATAA AGAATGTGAA GAAGAAACTT GACAGGAGAA GCAAAGCTAA
    CGGATGGGTT AACACCGTCA CTGAAACTTT GTCCGATCTC ATCGCCAAAA
    AGCAGTGGTT ACAAGCTCTC GAGGTATTTC GATTTTCTCT CTTCTCGGTC
    ATGTTTGATT GAATTTGAAC TCAATTTTGA ATCACGAAGT ATGATTTATC
    TGAAAGATGA TTTTGATTGA ATTGGGTATT TTGGG

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR