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GT20882

CSHL Arabidopsis genetrap mutant lines

Original: GT20882

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20882

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30346812 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon20 (CDS)
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: -614; Region: promoter
    Flanking Genome Sequence: GT20882 - 5-prime edge 
    AGTATGATTC CTAAAGATAG TTTCATCATG ACGACTTGAT GGAGACTGTC 
    AATCAGATTT GATCCTTTGC CTGCATGCAT TCGGGATACT TGAATGGCAG 
    CTTGATTACT GGTTCATCTC ACTCGACTAC TTGACTCGCC ATACCAAAGG 
    CATATCCTAA TGCAACCCCT ACAGGAACTG CCACAGCATT CCCAACTTGG 
    ATGTACCTAC AAAATTTAGA TTCAAACCCA GTTTTTACAT ACATTAGGAT 
    CTCCAGT

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80745.1

Model type
Protein coding
Short Description
Transcription factor TFIIIC, tau55-related protein
Computational Description
Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT3G15420.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR