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GT20905

CSHL Arabidopsis genetrap mutant lines

Original: GT20905

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20905

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1584122 [Map]; Strand: w
      • AT3G05470.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: -1575; Region: intergenic
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -1180; Region: intergenic
    Flanking Genome Sequence: GT20905 - 5-prime edge 
    AGGGAGAGAA TAAGATTGGA AAAGTTGTAT TTACTTTCAT CATTTTTTTA 
    TAGTATCAAA GCAGAGGTTG AGAATTGTGT GTTTCAATCC TATCTCTCAC 
    GTCGATAGAA AAAGATGTGA AAAAATTCCC TTAGTAGGAG ATTACTAGAT 
    TGAATGATTT ATTTTACCAT TGAGATTGAG TAAAACGAAT ATCACTAGAC 
    ATTTTTTTTT TTCCCGAATA TCACTAGACT TGGACACAAT ATTTGTTCCC 
    TATTGTTCCC ACCCGA

AT3G05470.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homolog 6 (TAIR:AT5G67470.1); Has 5495 Blast hits to 4819 proteins in 357 species: Archae - 2; Bacteria - 168; Metazoa - 2550; Fungi - 658; Plants - 1088; Viruses - 235; Other Eukaryotes - 794 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.2

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR