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GT20916

CSHL Arabidopsis genetrap mutant lines

Original: GT20916

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20916

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10946019 [Map]; Strand: w
      • AT4G20260.6 - [+] show detail - plasma-membrane associated cation-binding protein 1
        Distance: 2524; Region: intergenic
      • AT4G20270.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -3642; Region: intergenic
    Flanking Genome Sequence: GT20916 - 5-prime edge
    GAGTTGCTAG CAATAACTAG ATTTGTGAAT TAAGAACTTA TCTTCAAGGA 
    CGAAATTTGA GCTCCGAAAC AAAACTAGAG ATAGCTTTAT TACTCAGTTA
    GGACAATTTA AGAGTTTTTT TTTTCCCCCT TTCAAACCGA ATAAAGTTTA
    CTAATAGGAC AATAGGAAAA AATTTTGACG CAAACCCAAA TCGGATTCCC
    TCGGCCCAAT TAGGAGGAAG GTTTTTTTCC TTTTCCCCTT TTTTTGGGGA
    ACCCGAGAAA CGGATTATTT TTTAAGAGAA AATTACCTTA CGGTAACTAG
    ACAAATTTGA AATTCTTAAA AAAAATGGAA ATTATTTTAT TAAGGAGGAG
    AAATATCTTT TTTTATTCCA AAACCATTTC TATTGAAAAG AAACCGGTGG
    GTAAGGCGTA AAAATGTTGG CCCTTGGTAT AATTTTAAAA AGTTGATTTT
    CTAAAAAAGG GG

AT4G20260.6

Model type
Protein coding
Short Description
plasma-membrane associated cation-binding protein 1
Curator Summary
Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.
Computational Description
plasma-membrane associated cation-binding protein 1 (PCAP1); FUNCTIONS IN: calmodulin binding, copper ion binding, phosphatidylinositol-3,4,5-trisphosphate binding, phosphatidylinositol-3,5-bisphosphate binding, calcium ion binding; INVOLVED IN: response to cold, N-terminal peptidyl-glycine N-myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469).
Link
InterPro Scan - TAIR

AT4G20270.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.
Computational Description
BARELY ANY MERISTEM 3 (BAM3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, leaf development, floral organ development; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 219938 Blast hits to 139586 proteins in 4977 species: Archae - 151; Bacteria - 21929; Metazoa - 70277; Fungi - 10656; Plants - 90391; Viruses - 423; Other Eukaryotes - 26111 (source: NCBI BLink).
Link
InterPro Scan - TAIR