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GT20983

CSHL Arabidopsis genetrap mutant lines

Original: GT20983

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20983

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19651168 [Map]; Strand: w
      • AT2G48030.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -1020; Region: intergenic
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 28; Region: intergenic
    Flanking Genome Sequence: GT20983 - 5-prime edge 
    ACATGTTGTT GTCTTCCAAT GAATGATACT TGTATATTGA TCTATAACAA 
    CTTAACAAAC ACACTAGAAA ACGACTATTT TATTATATTT CTCATTCGTA 
    GACTACTAAT TAGTAATTAT TATCGTTTAT GAGGTCATAG ATAATCAATA 
    ATCAAGGGAT GATTATTTAA TATTGGGCCA CGGCCCACTA TTCAATTATA 
    CTATGTGTGT TTCGGCCCAT CGTCTCGGAT GTGTGGCTCT GTCTCCTCTT 
    TTCATTTTGG CTGGTTTAGT CTTTTAGGAG ATTGGACTTC TGAATGTGGA 
    ATGCTTCTTT GAACCCATCT CTCATTTCTC CTCTTTTCAT CTCACTCGAC 
    CAACAATATC AACTACAANC TGATTGAAAA CAAAACAAAT CCCTCAAAAT 
    ATTCCGCTGA GGATGTACAA ATATGACAAA GTGTTTCTTT AGTGTGAGAG 
    ACTGGTTTTG GACCTAAGCA TCATAGTCTA GCTTTGTATA CTCGAGCAGC 
    ATGTGCGGGG ATCTATAGAT CTTCACAAGC GTCCAGTATA GAACTTCTTC 
    TACTCCAAGC TCACCCTCTG CTCTAGCCGC GTAAAAGTCT TCGCATATGG 
    CTATTAATCT ACATTCAACA GTGAGTGTTC ATAATCT

AT2G48030.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G21530.1); Has 404 Blast hits to 404 proteins in 167 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR