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GT20998

CSHL Arabidopsis genetrap mutant lines

Original: GT20998

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20998

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 508414 [Map]; Strand: w
      • AT3G02460.1 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon9 (3UTR)
      • AT3G02460.2 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon8 (3UTR)
      • AT3G02470.4 - [+] show detail - S-adenosylmethionine decarboxylase
        Distance: -472; Region: promoter
      • AT3G02468.1 - [+] show detail - conserved peptide upstream open reading frame 9
        Distance: -673; Region: promoter
      • AT3G02470.3 - [+] show detail - S-adenosylmethionine decarboxylase
        Distance: -682; Region: promoter
      • AT3G02470.1 - [+] show detail - S-adenosylmethionine decarboxylase
        Distance: -703; Region: promoter
    Flanking Genome Sequence: GT20998 - 5-prime edge 
    TGTTTAAAGG TATTTTTATT CTTTAAGGTT CATGGCACTA AACTAGTCCA 
    AAATCTCAGA ATTTTAAATA CGACTTCTGG TTGAACAAAA AAGATTTGGA 
    ATAAATAATT ACACACTGGT CAATAGTGAT TGGTTATAAT TTTGATACAT 
    TTTATTTGTT GATTTTTGAC AAATGGTGGA CATGAGTCAT GAGTGAGTCA 
    CGGGGAGGCC CAATTTTGTC ATGTAGTGGA GCAGTTGAGA GCCTTTGAGA 
    AATAGAATTT GATTCTTTTA GGCCCCACGG CTACGCTACC GTGACAGCTC 
    GCCTCGAGTT ATCCGCTTCA ACGGCACACG TATCTTCTAA ACACGTGTCA 
    ATCTTTGATT GGTTAATATA GCGTGTTGGC CCATCTCTGT TTTATATTTT 
    GTTGTTCCGC AAAAGATAAT GTCAAAAAAT AATAAAGAAA CAAATCTCTA 
    AAATTAAAAT AATTTCTACT TGCGGCGAAA GGAAAAAGCA AATTTGTTAA 
    AATAGTTGGG GCTATTTATC TGCGGTCAGG AATGGAGATG CTCGCACCTA 
    CCGATTCCAA CGTAAGTAAA TGGTTGAAGG GTAATTTGGG TAAAAACCTC 
    GGAACGGCAA ATTGGAAATA ATCAACGGCT CAGATAGCTT CACGCGATAT 
    AAACGCTAAG GTATAAGGTC AAATACGTAA TTGTCAGGGA GCATAACCCT 
    AGTACTTATA TAAAGGCACT CTTTCTACCT TTCTT

AT3G02460.1

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 5276 Blast hits to 5263 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2708; Fungi - 1087; Plants - 526; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02460.2

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 4815 Blast hits to 4807 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2496; Fungi - 964; Plants - 519; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02468.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 9
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1
Computational Description
conserved peptide upstream open reading frame 9 (CPuORF9); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 10 (TAIR:AT5G15948.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02470.1

Model type
Protein coding
Short Description
S-adenosylmethionine decarboxylase
Curator Summary
Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description
S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02470.3

Model type
Protein coding
Short Description
S-adenosylmethionine decarboxylase
Curator Summary
Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description
S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02470.4

Model type
Protein coding
Short Description
S-adenosylmethionine decarboxylase
Curator Summary
Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational Description
S-adenosylmethionine decarboxylase; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR