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GT21030

CSHL Arabidopsis genetrap mutant lines

Original: GT21030

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21030

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 192810 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -5183; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -1069; Region: intergenic
    Flanking Genome Sequence: GT21030 - 5-prime edge 
    TCCCGGCCCT GACTGAATTA AGTTGCTTAA AGAAAACTCA ACTCAAGTAA 
    CTGAGCATGG TCAAGATCTA TTCGATTAAA ATTTGATATA TATACCAAAT 
    GGTTTCGACT TTTGCTAATT GCTATGCCAC CGATGAATCA GACAATGCAA 
    GCTAATTATT TCTGTTGTAC CATAAAGTGC TTGACTTTAT CAGCAAACCC 
    CACAAAACAT TTTCCTTAAC GGAAACTTTA AGTACGAGTT CTAACATTCA 
    ATTATGCTCT GTTTGATTAG AATCAAAGAA ATAAATAGTT TCTTGATATT 
    ATAAAGTTCT ATTTGTGTAT TTAATATTAT ATATCAGTTC TTTTTTGCGA 
    TTCAAACTCG AGTTAAGATA GAGACGATTG ACGTGACGGT GGATATATGC 
    ACACGAGTCA CAACAAAATA TTATATCTAT AATCGACGGT TGAAACAAGA 
    ACTCTAGCTA ATGTTTTGGT TACACTCGGT TTTCGGACAT GGTTTAGAAA 
    AGCACAACTC TTCCTTAAGA GAATGACAAA ACGTCGTCGT TAACTTTAGA 
    TTAATGACTT GGTCAATGAA AACAATCGCA TTTGGTGTAA TAATCTCAAA 
    TACTACGTGT TCTCCATATT CCATAACCAG CCAAGCAAAA GCACCAATGA 
    CCAATTACGT CTCTCCTCTT TGGGCGCGCC CACTCAATTC TTATAATTTA 
    TCTA

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR