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GT21051

CSHL Arabidopsis genetrap mutant lines

Original: GT21051

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21051

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1163538 [Map]; Strand: c
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon3 (CDS)
      • AT5G04230.1 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT21051 - 5-prime edge 
    AATCCTCTCC CGGTGACCGA ACATCCTCTC CGGTTACCTT CCTCGTCTCG 
    AGTTCATTCC GCACAAACCG GTACAGCGGA TACGATCGAC ACTTCTTGAT 
    TCGGTTAGCC ACATTAAATG TACCGTTCTC GTACTCTGTC CTGACTCGTT 
    CCACTTCTTT AGGGAGGAGA AATTTCAGCT CGGCCTCGAA CGCTCCGATT 
    TTCCGAAAAA CCGTGTCGGT CTCGCCTTCC GGTTCAGCTA AAGCTTTGTC 
    GAAGAGGACA TGTCTCAGCT TCTGCATTAA AGGGTTAGTG AGGCTGCTTG 
    GGTCATCAAC ATAGGAGAAG ACGTATTCGC GGTTGACAAC TCCAAGAATA 
    TCGTCGTGTT TGCGGAATGG TTCGATTGCT AGAACGCTTT TGGCAGTGTG 
    GCTCACAACC TCATTAACCG CTTTCTTGAG AATTTCTTCA AGGTGTCTCA 
    GATCAAAGGC TTGGCACAAA GCTACCAAGT AAGTCGTTGA CATGAGCTTG 
    AGGATAACCA CAGCTTCTGC TGTAGTTCGG CTCGAGATCA GCCCAAGAGA 
    GTTAACATCT TGATTGTGTT GAGAAGCGCT TTCGACATGG TTCGTCACAG 
    GATTTGCTAG GAACTGAAGC TCTGAGCAAT AAGAAGCCAT GGCGACTTCT 
    GCGCCTTTTA ACCCGTAATC AAGACTAGGG TTTCTACCAC CAGATAGATT 
    AGAGG

AT5G04230.1

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04230.2

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link
InterPro Scan - TAIR