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GT21111

CSHL Arabidopsis genetrap mutant lines

Original: GT21111

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21111

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21765491 [Map]; Strand: c
      • AT3G58860.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: -185; Region: promoter
      • AT3G58865.1 - [+] show detail - transposable element gene
        Distance: -388; Region: promoter
    Flanking Genome Sequence: GT21111 - 5-prime edge
    CTCAAATCTT CTTTATGGCC ATTTATGTGG GAGATTCAGT AATCCCCCCT 
    AATTTAGGGT TCCCCAAATC AAATCAATCG TCATTGATTT AGCAATTGCG
    TATATGTGAT TTTTCTGCTA TAATTTAGGG ATTTTAATTT GCTTCTTGTT
    TGAATTAAAT CGCTCTGTTC CTTTCTCAGT TTTTAGATCC TAGAATATTA
    CTGTTTGGTA CTGATGTATG CTTGATTTTT CTATTGCTTA GGAGATTTGT
    GTAGACAATG GACTCGGAGA AGATGGATCT CTTCAGCAAG TTACCGGACG
    AGGTTATTTC TCATATCTTG TCATCCCTTC CAACCAAAGA GGCTGCTTCA
    ACATCGGTTC TCGCAAAGAA GTGGCGTTAT CTGTTTGCGT TTGTCCCAAG
    TCTCGATTTC AATGACTCTG ATTTTCTTCA TCTCTCTCAA CCAAAACGGG
    AAAAGGACGG AATTCTTCGG AGTTTCATGG ATTTCGTGGA TAGGGTTTTG
    GCATTGCAGG GCGCTTCTCC CATTAAGAAA TTCTCCCTAA ATGTTAAAAC
    TGGTGTTGAT CCTGACCGTG TGAATCGTTG GATATGTAAT GTGTTGCAAC
    GCGTTGTTT

AT3G58860.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58900.4); Has 2117 Blast hits to 2070 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58865.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR