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GT21122

CSHL Arabidopsis genetrap mutant lines

Original: GT21122

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21122

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85085 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -316; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -331; Region: promoter
    Flanking Genome Sequence: GT21122 - 5-prime edge 
    TGTAGGCGAA CCCAAGTTGC GAGTGGTGAG GCGGAAATGG TGGATAAGAG 
    CAGAACTAGT GCTTGTGCTG CTCATCTCTC GAAGAATCCT CTCTCGTATC 
    GTATGTTGTT GATTTTCAAT TGCAAAGAGA GCTTCAGAGA AGGAACGATT 
    GGTTCCGGTC GAGTTTCGTT GCCCACATTT GATATTTTCC AAAACAACCC 
    AATCCTTTTT TTTTCCCCCT TAAACCTTTT TCCCTCCCAA ACTTGGTAAC 
    CCAATGGAAA CCAAGTCCTT TTTAAGAAAA AGCCAAGGAA CTTTTTTGGG 
    CCTTTTATTG GTTTTTAAGG GCCCTTACTA CCGGCCCAAA AGTAAGTTTA 
    AACCAATAAT GGTGAAGGGG GGTCCCTTTC CAATTTCCAC CAAAGGCTCC 
    CTTGGCTTGG CCGTTTTCCC CCCCGTCCCA AGGGCAAAAA AACCCCCGGG 
    GAAAAATCCC CAAATCTGAA TCCCGGGAAA ATCCTTGAAC CCAATTTTTT 
    CTTCCAAACT CTTTCCCCTT CCTCCAAAAA CAATTAACGG GCCGAATGGT 
    TCCCTCCCTT GGCCCTTAAT TTCTCCAAAC CAATTTTGTT TTTACCTAAT 
    AATACCAACC AATTTTTCCA CCCCCCATAA ATTT

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR