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GT21148

CSHL Arabidopsis genetrap mutant lines

Original: GT21148

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21148

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639983 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT21148 - 5-prime edge 
    CCTGCCTCTG AGCATCAGCA AATAGGTGGC AAGCGTAGGC TTAACAAGGC 
    CGTTCTTCAT GGAGTGGAAA GTTGCTTCCA TCTTATCCCA ATCCCAAGCA 
    TAGATGTACC CAGCAATCAA GTTGTTGTAG GTGCTGGAAT CGGGAAGGAT 
    ATTGAGTTGT TGAAGCTGTA GGAATACTGA TTCCATCCGC TCAACCATAA 
    TCAAACGGCC ATAAAGAGAA ATGAGGATGT TGTAAGTAGA GACAGATGGA 
    GTAGAAGAGG AGGGTCCGTC TTGTTGAGAA TTGAAGTCAA GGAAGAGCTG 
    CTCGCAATGA TGAGACAAAC CGTTGCAGAG GTAAGCACCC ATCAAAGCAT 
    TGTAGACGGA GGTGGTCTTG TTTGCAGACT CGTGAAACAA GGAAAGGGCC 
    AAATCGACAT TCTTCAGTCT ACCAGAGATG GTAATGCCCT TAGCGTATTC 
    ATCAGCAGTC ATAGGCAACC CATCGCATAG TGCCTTGTTT CATCTCTCTC 
    GACC

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR