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GT21176

CSHL Arabidopsis genetrap mutant lines

Original: GT21176

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21176

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3155656 [Map]; Strand: w
      • AT3G10190.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21176 - 5-prime edge 
    TCGTTACTTA GCCGGCTAGG TCCTGATCCT TTGACGGAGG AGGAGATCAA 
    CGTTATGCTT AAAGAGGTGG ACTGCGACGG CGACGGTACG ATCCGTCTTG 
    AAGAGCTTGC GAGTCGTGTA GTCTCTTTAG ATCCGGCTCG TGACTCGACT 
    GAGCTGAAGG AGACTTTCGA GTTCTTTGAC GCGGATCGTA ACGGTTTGAT 
    CTCGGCTGAT GAGCTTCTAC GAGTTTTCTC GACCATTGGA GATGAACGGT 
    GCACGTTAGA TGATTGTAAG CGTATGATAG CAGATGTTGA TGAGGACGGT 
    GATGGTTTTG TGTGCTTCAC TGAGTTCTCA CGAATGATGG ATCTCCAGCG 
    TTGATCTTCC CTTTTCTTTT TTTTCAAAGT TTTTTTTTTC TGGTTTTTGC 
    TTGGCCTAGG AGGGTGTTTT TGCCCTTGTT CAAGGGTTAC AAGTTTTTTT 
    GGTTTTTTGG GAATTTATGG TTTTTTTTAG CTTGAAAAAC TTGTATGGTT 
    ACCAAAAAAA AAATAAATTT TGAAGTATAA ATAATTTAAT ATAAAAAATT 
    CGAATAAAAC CCTTTCTAAA TTTAAAAAAT

AT3G10190.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1); Has 18786 Blast hits to 12756 proteins in 1414 species: Archae - 1; Bacteria - 149; Metazoa - 7817; Fungi - 3299; Plants - 4581; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).
Link
InterPro Scan - TAIR