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GT21242

CSHL Arabidopsis genetrap mutant lines

Original: GT21242

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21242

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5305 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron16 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron15 (CDS)
    Flanking Genome Sequence: GT21242 - 5-prime edge 
    CCTGCATTTC AGTCCATTCG AGGTCCCAGC AACTCTGAAA AGCTTATATT 
    TGGAACTCCC CGTTCCATAT AAGCTCATAT GGATAAGGTC CGTGTAAACT 
    TATTAGCCAT TAGAAAAATG CCTTATTTTA AATTGTGCAT GAAACATTCA 
    GATTTAGGCA TTTGAATGTA CCTGTCTCTC CGTGGGATCC CAGATTGTTA 
    CAATGCCTTC TTTTGGATTG TGCTCTCCTT CATAACTTAA GCTCGTCAGG 
    CCAACAAGCC TAATCCTCAT GAACGGGGTG ACGTTCCTTT CACCTAAACC 
    AGCGTCTTCC AGAGTTTCTG CCACTGATTT TTCCTTCCGC ATTTGCTGGG 
    CTGCCTGAGG TTCAGATTGA AGCAGTTAAT TACTGTAATC AATATATCAA 
    GAAAAGGAAA TTACTATTCT ACCTCAAATT TTGCTTTATA TGTAGTGAAA 
    GATCTCAACT GCTCTGGGCT CATTTCTGCC ATAAGAAATT CAGGTTCAGC 
    AGCCGTCTCT AACAGCTTAA AGATCTTGGC TCCTTCTTCG CTGTCAGTGT 
    CGTTCTGGCT GTGAACACCA TTAATTCCTC TCTGGTACTC ACACATAATA 
    CCCTCAACAA GAGCTGAGCG CCTACGGAAA ATAGAAAGAA AAAAAAAAGG 
    C

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR