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GT21260

CSHL Arabidopsis genetrap mutant lines

Original: GT21260

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21260

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14453821 [Map]; Strand: w
      • AT2G34220.1 - [+] show detail - Protein with domains of unknown function (DUF627 and DUF629)
        Distance: 0; Region: exon5 (3UTR)
      • AT2G34230.1 - [+] show detail - Protein with domains of unknown function (DUF627 and DUF629)
        Distance: -818; Region: promoter
      • AT2G34230.2 - [+] show detail - Protein with domains of unknown function (DUF627 and DUF629)
        Distance: -818; Region: promoter
    Flanking Genome Sequence: GT21260 - 5-prime edge 
    TGTGAGAATT TGTAGTTTGT TTTAGGATCA GATGCATATA TGTTTGTGTG 
    TCTGGAGAGA TTGAGAAAAA CTGGGACATA GATACAATGG AAAGCTCTTG 
    TTGATATTCA CAGGCTTTGT CAAATTTATC AGGAAAGTGG TGAAAACACA 
    TTTTTTACAA ATTGTTAGGA AGTCAATTTC TCTCTAATCC AAAAGAAAAC 
    CCTCTTACTT CACTAATCCA AGATTAGTTG TCTCACTTTA TCAACGAAAA 
    AACATTCCAA AATTGCACAC ACAGAGACAT TCAATGAACT ATTTTCTCTC 
    ATAGTTCAAC ACAAATTTTT ACATCAAAGA TCAAAACTTC AAACGCTATT 
    TGAGCAATGG CTCCGCCTCT TTCTAGGCCT CACCTCCGCT TCCGTCTTCT 
    CGACTTCTTC GTCGGTGATC ACATCAAGAA AGCTTTCAGA GACAAAGAAA 
    TATGAAATGT TGGTAACGGT GACAGAGGAT GAGAAAAACC TTACTTGGAA 
    AATGATCATG GGATACTTCT ACTATGTGTT TGTCTTGCAG C

AT2G34220.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF627 and DUF629)
Computational Description
maternal effect embryo arrest 20 (MEE20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34230.1); Has 91 Blast hits to 91 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34230.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF627 and DUF629)
Computational Description
Protein with domains of unknown function (DUF627 and DUF629); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34220.1); Has 93 Blast hits to 93 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34230.2

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF627 and DUF629)
Computational Description
Protein with domains of unknown function (DUF627 and DUF629); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR