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GT21263

CSHL Arabidopsis genetrap mutant lines

Original: GT21263

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21263

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3466099 [Map]; Strand: c
      • AT5G10960.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 412; Region: intergenic
      • AT5G10970.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -3169; Region: intergenic
    Flanking Genome Sequence: GT21263 - 5-prime edge 
    TGACGTCTGA ATTTGGCCAA CAAAACATTG ATTGCATTAG AATGCTACTC 
    ATTGACAATA TGATAATAAA TTGGCTATTG AGCTGATTGG CGAATGCAAC 
    AGCATACATA TGTGATTCTC CTCCACATTA ACCATGACCT GATACCACTT 
    ACATCATAAA CACCTAAAGA ACAAATCTTT ACATCAATCG ATTACCATGG 
    CTCTGTTTAT TAAACAATGT AAACATATAA CCTTTAGCAT AAGCAGTTCA 
    TTGTTCTTCT

AT5G10960.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10970.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR