Home
Mutant Lines
GT21305

GT21305

CSHL Arabidopsis genetrap mutant lines

Original: GT21305

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21305

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 20344968 [Map]; Strand: c
- AT3G54910.1 - [+] show detail - RNI-like superfamily protein
  Distance: -236; Region: promoter
- AT3G54910.2 - [+] show detail - RNI-like superfamily protein
  Distance: -179; Region: promoter
- AT3G54910.3 - [+] show detail - RNI-like superfamily protein
  Distance: -162; Region: promoter
- AT3G54920.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: -114; Region: promoter

TGGGTCTCCA ATTTTGGCAA CCAAGCTCGT ATTTTATATT GGGCCTAATA 
CATCTCATTT CTCGTCAAAG TCGTTGCTAA AGCAAGTTGA TAATTAAACA 
CCCAAGTCAA ATGGACGCCG AACGCTTTGA TGTGTGTATA ATATTAAAGT 
TAGGCCCATA ACTAGGCCTA TATCTAGGCC CATCGTTTTA TGGTAATTAA 
ACACCCAAAA TTAAATGGAC GCCGAACGCT TTGATGATAT GTGAGTGTCA 
ACGGCGAGGA CAACACTTTG TCGTTCCGAT GCTCAGCGAT TGTGGTATCT 
CTGATAAACC AACTTGTTCA TATTCCTTTT TTCCTTGCAA TTTACCATTC 
AAGCTTCGTT TACATTTACC CTTTCTTGAT TCCTAGTTCA GACTACCATT 
CTACTCAGAT TTGAAAAGTT GATACTTATA CAGTTCTTTG GGCATTTTCT 
GCCTTAGCTT CAGATTCTGG TTCCCGAGCC TCCAACACAA AAAAATTCTA 
AGCTTCACCT AACAATCTAG CTTGTTTCTA AGGTTTAGTA CTGTTCCTCT 
TTGTGTCCGA GTTTTCACTT GGTTACCTAA ACTTAAGTAT GGTCATAGAG 
ATTCTTCTGA ATG

AT3G54910.1

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54910.2

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54910.3

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54920.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Curator Summary: Powdery mildew resistant mutant encodes a pectate lyase-like protein
Computational Description: powdery mildew resistant 6 (PMR6); CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 2753 Blast hits to 2553 proteins in 415 species: Archae - 3; Bacteria - 1039; Metazoa - 313; Fungi - 409; Plants - 814; Viruses - 7; Other Eukaryotes - 168 (source: NCBI BLink).
Link: InterPro Scan - TAIR