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GT21338

CSHL Arabidopsis genetrap mutant lines

Original: GT21338

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21338

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19646191 [Map]; Strand: c
      • AT3G52980.1 - [+] show detail - Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containi...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21338 - 5-prime edge 
    CATCTGCGCA AAACTATCTT TCTCCGGTAT GATTTTTCCA TGGAAATAAC 
    GACAGTTGTT GCCGTGTTTG CAGAATCCTT TGTTGAAGTA ATGGCAGATT 
    TTGAGAGGAA ACTCTGGTAA ACTCAGTGAT CTTCGACTAG TTCTTAAAGA 
    CAAACTCTGT TTCTTCTGAG AGAAGAAACT AGTTGAGAAT TCAGGACTGG 
    TCACAGAATC CTCAAAATCC AAGAAGTACT GAACATTGTC TTTCAATGAT 
    GAATCCATAT CGTTTGTATT CTCCCAAAAA CTTGTTCCCA TAGAGAGAAC 
    CGAAGGAGGA GAGGCAGAAA CCAAAAGAGA TTGGTTTGAT GAACCGGATA 
    ATGATCCGAA TTTACGGATT TGAATGTGAT CAGAAGAAGG GATGTTATTG 
    TAATGAGAGT TTTTAGCCAA TTCACATTTA ACACAGTTGA TCATAGAACG 
    CATCACCGAA TCTGGACAGA ATGCGAGACG TATCATGTCA CGGTCGTTTT 
    GATCTTGCAT CAACAAGAGA TAACCTATGA TCTTCGATGC ATTCTCTGGT 
    TCAAGTTGAT GGATTCTGTT GTGCACAACA TT

AT3G52980.1

Model type
Protein coding
Short Description
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Computational Description
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G05160.1); Has 228 Blast hits to 174 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR