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GT21399

CSHL Arabidopsis genetrap mutant lines

Original: GT21399

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21399

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 199344 [Map]; Strand: w
      • AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: -96; Region: promoter
    Flanking Genome Sequence: GT21399 - 5-prime edge 
    TTAATTTGTC TTATTTCTAC AAGAGTTAAA GTTGGAGTCT TGGACAATTA 
    AAAATTACTC ATTTTGAGTT TTTTCATGTA TGTTTATTTG ATCGATTCAT 
    AGTCCAAGTT TGAATTTGTT TATGAACTCA AAATCATTTC TTATGAAGAT 
    AATAGCAAAA GATTATGCAA AAGATTTTAG TTTTGCTTGC TATTGTTTAT 
    TGTAGATATC AACATCTAAT TTAAGTAAAT GATGATTTAG GTAGATTGTG 
    GTAATAAGAA TATATATATG AATTTCAAGT TCCAAGAGAA ACCATTACAC 
    ACGAGATTCC AATATGAGCA GAGAGTAAGA AGAAGAAGAA GAGAGTTACA 
    ACAATGAAAA CACTCAGGAG AGACATCATG ATACAATAGG CAGAACACAA 
    CAATCAATGG TTTGCTGCTA AACAACTTGA GAAATCAATT TTTTTCTGAC 
    TATGACACTG CAGAGGAGAC ACCAACACAT CTTGAAGCAC AGATACTATC 
    ACTCCTCATT AGACATGCAG ACCGTTTTAC CGGAGTTGCT GCTTTGTCTA 
    CTTGTGACGC CTTCTGTGAT GATAAGCCAG TTGCTGTGTT TGGAGTCTGT 
    GGAGGTGTAA ACACCACTGA AGCTGAAGAC GATTGAGCAT GAACTGAATC 
    AGAACCTTCG TCTTCTGATG AGCACACCCG TTCTCTGCAA CCAAACCCAA 
    ACATGTACTT ATAGCCTGAT TCGCTTAAAA CTCATGATGG TTCAGTTTCA 
    AGAAGTAGTA ACTCACCTAG GGAGTGAAGT GTACTTTCTC TGATGTGGTG 
    GGGGAGTTGT GTTCCTCTTC ATCGTCGTTG TGTCT

AT2G01440.1

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR