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GT21429

CSHL Arabidopsis genetrap mutant lines

Original: GT21429

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21429

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 125704 [Map]; Strand: w
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: -113; Region: promoter
      • AT4G00300.1 - [+] show detail - fringe-related protein
        Distance: -805; Region: promoter
    Flanking Genome Sequence: GT21429 - 5-prime edge 
    ACGTCGTTTT AGTCACCTTC ATCTCACTCG ACATTTGGGC CTAATGATTC 
    AAATTTGTTG GGCTTAATGC AAGTTTGATT AATTTGGTGC AAAACCTTAT 
    TAAGAAACAC ACACACACAA AGTTGTGAAT TTGTGAATTT ACTTAACTAC 
    GTACATATAT ATAATCATTA ATTAATCACG GTGTTTGGCA AATATATATG 
    GTTACAAATT CAATATGTTT TGGACAAAAT AATATGTGCC TAAATCTGCT 
    TATAAATGAC AAAATATATA CAACCACTAA AAATAGAAGA GATATTTATC 
    ATGAATTGTA CTCCAATAAA AAAGGTATTG ACTTTAGACA AAGTATCATC 
    CTAAGATGGA GTATTTTGCA AATACTTGGC TACAATAAAA AAAACTGATA 
    GATTTGTGTG AAAAACGCTA TTTTCAGTTA TTAATTACTG TAATCATTAA 
    TGTTGAAATG TCGTTTTCCA TCTTATGGTT TTATTCTTGT GGAGAATTAA 
    TGTTCCAAAA ACAGCTTTGA CTCTAATAAA TTGGGAAATA TAAAAAGGAG 
    ATTTCTTTCT AGATCCAAAA TTTTTTTTTA ACTAAATAAG ATTATTTTAG

AT4G00290.1

Model type
Protein coding
Short Description
Mechanosensitive ion channel protein
Computational Description
Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00300.1

Model type
Protein coding
Short Description
fringe-related protein
Computational Description
fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR