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GT21561

CSHL Arabidopsis genetrap mutant lines

Original: GT21561

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21561

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16980432 [Map]; Strand: w
      • AT4G35837.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT4G35840.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -529; Region: promoter
    Flanking Genome Sequence: GT21561 - 5-prime edge 
    AACACAGAGT CTTGGGAATA CAATTATACA GAAACGGTAA GGGTAATCAT 
    TCATCTTCTC GCACGTAATA GCACAATAAC AAAGTCTCAC CGTACCCATT 
    TTAGTTTGGT ATAACAATAA AGTATTGCTC ATATTAAGGT TCTTACTATA 
    AAAGGAAAGG AAGAATCAAA ATAAGATTTT GAGATTTCCT CAAATAGTTA 
    ACATGTATAG AAATTATTTC TGTTTCGTAT CTAATTGTTT CTTCTGATTG 
    CTTGTATGAT TCGAAAATGA TCGACCCTAC CATATTTTGG TATTATTCAG 
    ACAATCTAAA TATCTCCCGT AGTTTTCTTA TAATTAAAAT CTAACACATT 
    TTAAAAATTT ATGTAAAAAA TGAAGAAGTT ATTTTATTAA ACTATAAATA 
    ACCTTTTCTT TATAACTCTC TGCTTCTATC TTTCGAGCAT TGAAATGATA 
    AAAAAAAAAA TT

AT4G35837.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35840.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).
Link
InterPro Scan - TAIR