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GT21568

CSHL Arabidopsis genetrap mutant lines

Original: GT21568

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21568

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18977200 [Map]; Strand: c
      • AT3G51080.1 - [+] show detail - GATA transcription factor 6
        Distance: 2308; Region: intergenic
      • AT3G51090.1 - [+] show detail - Protein of unknown function (DUF1640)
        Distance: 788; Region: intergenic
    Flanking Genome Sequence: GT21568 - 5-prime edge 
    TAGTTGAAAT TGAATCGGGT GAGAAATGCT CATCACGTGA CTCCACCCAC 
    GCCTCTCTTC GGTTTCCCTC TTTTAAAAGT TCAACTACAT CAATTAGGTA 
    TACTAATTAG TATTACTAGG TTTTAACCCG CGGTTTACCG CTGGCAATCG 
    GTTTATTTGA TTTTTATACT AAATATTTGA ATAAATTTGA TATTTTAAAC 
    TTATAAATAT AAATTTTTAG TGATTAGTGA AGAATCTAAT ATATGATTTT 
    GATATTATTG ATTATTGATT TCGTGATTGA ATATAGTGTT TTTAGAGATG 
    GAATGTGATC ATATTTTGAT TTCAAAAACG ACATAGATTC CTTATTTTGT 
    TGAACGGTTT AGATTGAAGA AATTTAATTT TATTGAACGG TTTAGATTGA 
    AACAAATCAT AATAAAGGTT AAGAGATTGT TAAGACCAAT TTACCCTTAA 
    TGATTTTGAA TAGCAAAGAA CAAAATCCTA AATTGAAATC AAAATTGAGG 
    GCAAATTAAA CCAAATTTCA ATTTGGACTT GGCTTTTAAT AAACAAGGG

AT3G51080.1

Model type
Protein coding
Short Description
GATA transcription factor 6
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 6 (GATA6); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1500 Blast hits to 1468 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 554; Plants - 766; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51090.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1640)
Computational Description
Protein of unknown function (DUF1640); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G16460.1); Has 506 Blast hits to 503 proteins in 168 species: Archae - 2; Bacteria - 7; Metazoa - 203; Fungi - 173; Plants - 82; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR