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GT21572

CSHL Arabidopsis genetrap mutant lines

Original: GT21572

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21572

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309726 [Map]; Strand: c
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -617; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -617; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -379; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -590; Region: promoter
    Flanking Genome Sequence: GT21572 - 5-prime edge 
    GGTAGGTGGA TATTAAACTG GAGAGGGAGG GGACAAACGC AACAATAATT 
    TGGGGCGTGA CTTAATATAT TACTCATACC ATATAACCAA GTTTTCTTCT 
    ATATTTCCTA TGATTCAAAT CATTGCTTGT TCACACTTCA CTCATAATCC 
    CTTTGTGTAC TGGCTTTCAA GCCAAGTATG AACACGTAAG CCGACGACTT 
    ACATTTTTTT TTTTTTTTTT TAAGGCCCCC CCCCCAAAAA AATTCAAAAA 
    ATTTCCCCCA ATTTTCCCTT TTAATTAAAA ACCCTTTAAA AAAAAAAAAA 
    ACAACTCCAA AAAAGGGTTT ATCGGGGTTT TCAATTTTTT CCCCCGGGGC 
    CCCCCAAAAA CCCCAATAAA GGCCCAAATT TGCAATTTTT GGAAAAAGGT 
    TTTTCGGGTT TTTTCCGAAA AATTTAAAAA AAAAAATTTT TAACCCAAAA 
    ACCCCCCTTA ACTATTTTGG AAAAGCCAAA GGGTTTTAAC CTTGGGGCCG 
    GGGGTTCAAA CCCCAGGGGG GGGAAATGAA AAAAAAAATT TTTTTTTTTT 
    TTTTTTTTAA AAAAAATAA

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR

AT1G01890.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT1G01900.1

Model type
Protein coding
Short Description
subtilase family protein
Curator Summary
Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.
Computational Description
SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link
InterPro Scan - TAIR