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GT21598

CSHL Arabidopsis genetrap mutant lines

Original: GT21598

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21598

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23054421 [Map]; Strand: c
      • AT3G62300.2 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
        Distance: 0; Region: exon1 (CDS)
      • AT3G62300.1 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21598 - 5-prime edge 
    CGGCGGAACT GGACGCATGA AACGATGCAC GGTGGTTTTG ATTAACGGAG 
    GAGAATAATC ATACTTGAGC AGAGGATCCA AGTGACGGAC AGAGAGCTTC 
    TTCCGCTTCG ATTTAGCTAG ATTTTCTTCG AGAATGACAC AATACCAGAC 
    ATTTCCACTA CCATACTCAT ACTCTTGAGA CGAGATTTCA ATTTCAGAAC 
    CTTTAGAAAC AGAGAGTTTC TCCTTTCTTC CCGTAGTTAA CAACATGCTT 
    TCTCTCAGAA AACCCTAAGA AACAACCACA ATCTTCTCCA CCAGAACCCT 
    AGACCTAAGA AGAGAGACGA AAGATAAAGT GAGCTCTCCT TCTTTGGGAA 
    ACCTTTAGAA AAAATGCCGC TAAGATTTTG AGTGTATGTA ATTGTTAAAA 
    GTGTAGTGGA GATCTACTAT TAATTAACTT CTTCTTCATT TTTCTTACAA 
    CGTATTTAAT CATGATTAAA TCGGGAACTG TAGCTCTTTG TACTGGTGCT 
    GCCCCCATCC AATCAGATTT GCGGATTAGT TCTAAATTCA GTTTTTTTTT 
    TTATTAATAT ACTTGATGAC ATATAGGAAT CAAAAAACGT TGATTTTGAT 
    TTCTCTTAAT TATACCGTTT GAATACGGTT TGGATTCTGT TCCAACATTT 
    TTCAAGT

AT3G62300.1

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 7
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62300.2

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 7
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1).
Link
InterPro Scan - TAIR